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SRX12686225: RNA-Seq of Brylkinia caudata
1 ILLUMINA (Illumina HiSeq 3000) run: 30.3M spots, 9.1G bases, 3.4Gb downloads

Design: N/A
Submitted by: Fudan university
Study: Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution
show Abstracthide Abstract
Pooideae is the biggest subfamily of Poaeceae with ~3,900 species (34% of Poaceae species), similar in size to moderately large families like Brassicaceae , Rosaceae and Apiaceae, and larger than 96% of angiosperm families. It contains important crops including wheat, barley and oat. So far, however, many of the relationships among Pooideae tribes and subtribes remain unclear or inconsistent relying largely on plastid markers. In this project, we aim to resolve its phylogeny by using hundreds to thousands of low/single copy nuclear genes from transcriptome data. Based on the phylogeny, we further conducted molecular clock analysis, ancestral character analyses, diversification rate analyses, gene duplication detection and molecular evolution of related genes, all these together provide clues to the possible factors of adaptive evolution of temperate grasses.
Sample: RNA-Seq of Deschampsia cespitosa
SAMN22335682 • SRS10637106 • All experiments • All runs
Library:
Name: =A69&"_1"
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 30.3M spots, 9.1G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR1648302330,274,4739.1G3.4Gb2022-03-15

ID:
17253897

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